Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3522Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (316 aa)    
Predicted Functional Partners:
CF8_2512
ABC transporter-like protein.
 
  0.948
CF8_0937
ABC transporter-like protein.
 
  0.942
CF8_1580
ABC transporter-like protein.
 
  0.942
CF8_2513
ABC transporter-like protein.
 
 0.940
CF8_0939
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.936
CF8_2510
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.936
CF8_1582
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.934
CF8_4001
ABC transporter-like protein.
 
 0.932
CF8_4000
ABC transporter-like protein.
 
  0.928
CF8_3523
Urocanate hydratase.
 
 
 0.924
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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