Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3541ABC transporter-like protein. (279 aa)    
Predicted Functional Partners:
CF8_3543
Transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.997
CF8_3544
Iron ABC transporter, substrate binding protein.
 
 0.996
CF8_1310
Ferric siderophore ABC superfamily ATP binding; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.984
CF8_3542
Ferric enterobactin transport system, permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.984
CF8_1311
Ferric siderophore ABC superfamily ATP binding.
 
 0.975
CF8_3540
FAD-binding 9, siderophore-interacting.
 
 0.930
CF8_1309
Transport system permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.917
CF8_2550
Metal binding protein.
  
 0.804
CF8_1607
ABC-3 protein.
    
 0.748
CF8_1608
ABC transporter-like protein.
     
  0.731
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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