Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CF8_3546GDSL family lipase. (257 aa)    
Predicted Functional Partners:
CF8_1942
DNA-directed DNA polymerase.
  
     0.614
CF8_3905
Hypothetical protein.
  
     0.608
CF8_0986
Metallophosphoesterase.
   
  0.592
CF8_2753
Hypothetical protein.
   
  0.592
CF8_3695
Hypothetical protein.
   
  0.592
dcd
Deoxycytidine triphosphate deaminase; Bifunctional enzyme that catalyzes both the deamination of dCTP to dUTP and the hydrolysis of dUTP to dUMP without releasing the toxic dUTP intermediate.
       0.563
CF8_3540
FAD-binding 9, siderophore-interacting.
 
     0.481
CF8_3544
Iron ABC transporter, substrate binding protein.
 
     0.470
CF8_2404
Oxidoreductase.
  
     0.416
CF8_3541
ABC transporter-like protein.
  
    0.404
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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