Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3563Histidine kinase, dimerization and. (214 aa)    
Predicted Functional Partners:
CF8_3564
Two component LuxR family transcriptional.
 
  0.986
CF8_3561
ABC superfamily ATP binding cassette.
 
    0.866
CF8_3510
Two component LuxR family transcriptional.
  
  0.850
CF8_1021
Response regulator receiver.
  
  0.849
CF8_1196
Response regulator receiver.
  
  0.849
CF8_4180
Response regulator receiver.
  
  0.847
CF8_1517
Response regulator receiver.
  
  0.845
CF8_1164
Regulatory protein, LuxR.
  
  0.841
CF8_2743
Response regulator receiver.
  
  0.841
CF8_3106
Regulatory protein, LuxR.
  
  0.835
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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