Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3567Hypothetical protein. (272 aa)    
Predicted Functional Partners:
CF8_3568
Short-chain dehydrogenase/reductase SDR.
       0.778
crgA
Hypothetical protein; Involved in cell division; Belongs to the CrgA family.
  
     0.653
CF8_3566
Alkyl hydroperoxide reductase.
       0.614
CF8_0076
Hypothetical protein.
  
     0.549
CF8_0292
Hypothetical protein.
  
     0.540
CF8_3854
Hypothetical protein.
  
     0.531
CF8_1098
Rod shape-determining protein.
  
     0.523
CF8_2568
Hypothetical protein.
  
     0.521
CF8_3150
Ribonuclease BN.
  
     0.503
CF8_3616
Anthranilate synthase component.
  
     0.500
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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