Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_3576Siderophore synthetase component. (590 aa)    
Predicted Functional Partners:
CF8_3577
succinyl-CoA transferase.
 
 0.994
CF8_3574
Acyl-homoserine-lactone acylase.
 
 0.991
CF8_3578
L-lysine 6-monooxygenase (NADPH).
 
  
 0.979
CF8_3579
L-2,4-diaminobutyrate decarboxylase.
 
  
 0.940
CF8_3575
Penicillin amidase.
 
     0.886
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.584
CF8_3580
Amidohydrolase 3.
       0.527
acpP
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.468
CF8_3492
Hypothetical protein.
  
 
 0.468
CF8_1930
aromatic-L-amino-acid decarboxylase.
 
  
 0.419
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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