Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3587Penicillin-binding protein, transpeptidase. (619 aa)    
Predicted Functional Partners:
CF8_2669
Cell division protein FtsQ; Essential cell division protein.
  
 0.921
CF8_2672
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.911
CF8_3164
Septum formation initiator.
  
 0.893
CF8_1100
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 0.891
CF8_3773
Glycosyl transferase family protein.
 
 
 0.865
CF8_0207
Glycosyl transferase family protein.
 
 
 0.834
CF8_2678
Hypothetical protein.
  
 0.810
CF8_0584
Hypothetical protein.
  
 0.723
CF8_0971
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.714
CF8_0304
D-alanyl-D-alanine.
  
  
 0.675
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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