Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CF8_3702Heavy metal translocating P-type ATPase; Overlaps another CDS with the same product name. (291 aa)    
Predicted Functional Partners:
CF8_3703
Heavy metal translocating P-type ATPase; Overlaps another CDS with the same product name.
   
 0.855
CF8_3329
Hypothetical protein.
  
 
  0.658
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
 
  0.647
CF8_1228
DEAD/DEAH box helicase domain-containing; Belongs to the DEAD box helicase family.
    
  0.598
CF8_3658
DEAD/DEAH box helicase domain-containing.
    
  0.598
deaD
DEAD/DEAH box helicase domain-containing; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
    
  0.598
CF8_3722
Short-chain dehydrogenase/reductase SDR.
   
  0.587
CF8_2017
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.570
CF8_3296
Hypothetical protein.
  
 
  0.564
CF8_2788
Hypothetical protein.
  
     0.558
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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