Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_3728Carboxymuconolactone decarboxylase. (194 aa)    
Predicted Functional Partners:
CF8_3727
Sigma-70 region 2 domain-containing protein; Belongs to the sigma-70 factor family.
 
    0.907
CF8_3726
Hypothetical protein.
       0.773
CF8_0302
Sigma-70 region 2 domain-containing protein; Belongs to the sigma-70 factor family.
 
    0.619
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.591
CF8_4016
4-carboxymuconolactone decarboxylase domain protein.
    
 0.495
CF8_3730
Ferric-uptake regulator; Belongs to the Fur family.
       0.459
CF8_1471
Hypothetical protein.
  
     0.430
CF8_0572
Muconolactone delta-isomerase.
     
  0.425
CF8_3432
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
  0.425
CF8_3731
Hypothetical protein.
 
     0.408
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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