Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3731Hypothetical protein. (196 aa)    
Predicted Functional Partners:
CF8_3684
GCN5-related N-acetyltransferase.
  
     0.655
CF8_0128
Hypothetical protein.
  
     0.635
CF8_2979
Hypothetical protein.
  
     0.629
CF8_1467
Hypothetical protein.
  
     0.603
CF8_3485
Hypothetical protein.
  
     0.542
CF8_3732
Hypothetical protein.
       0.517
CF8_3733
Hypothetical protein.
       0.517
CF8_3730
Ferric-uptake regulator; Belongs to the Fur family.
       0.511
CF8_0650
RDD domain-containing protein.
  
     0.497
CF8_3916
ATPase domain-containing protein.
  
     0.486
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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