Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3763Single-strand binding protein. (202 aa)    
Predicted Functional Partners:
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
 
  
 0.894
CF8_2655
DNA polymerase III subunit alpha.
  
 
 0.893
CF8_0270
DNA polymerase III, delta prime subunit.
  
 
 0.887
CF8_1250
UvrD/REP helicase.
 
 0.887
CF8_0195
DNA polymerase III, subunits gamma and tau.
    
 0.865
CF8_2688
Error-prone DNA polymerase; Belongs to the DNA polymerase type-C family. DnaE2 subfamily.
    
 0.864
CF8_3757
DnaB domain-containing protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
 
 0.839
priA
Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
  
 
 0.838
rplI
50S ribosomal protein L9P; Binds to the 23S rRNA.
  
    0.825
CF8_1749
DNA primase catalytic core.
   
 0.822
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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