Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3771Methicillin resistance protein. (378 aa)    
Predicted Functional Partners:
CF8_0446
Peptidoglycan binding domain-containing protein.
 
    0.745
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
   
 
 0.716
CF8_0658
Integral membrane protein.
  
     0.669
CF8_2111
Cyanophycin synthetase.
    
 0.650
CF8_2932
Cytidine/deoxycytidylate.
 
     0.637
CF8_0122
Hypothetical protein.
  
     0.605
CF8_3418
Peptidoglycan binding domain-containing protein.
  
     0.551
CF8_1226
ErfK/YbiS/YcfS/YnhG family protein.
 
    0.540
CF8_2720
Flavin reductase domain-containing protein.
  
     0.513
CF8_1188
Hypothetical protein.
  
     0.488
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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