Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3779Integral membrane protein MviN. (552 aa)    
Predicted Functional Partners:
CF8_3778
Hypothetical protein.
 
     0.827
CF8_3780
Serine/threonine protein kinase.
 
    0.808
CF8_3781
RNA polymerase sigma factor SigM; Belongs to the sigma-70 factor family. ECF subfamily.
       0.634
CF8_3777
HDIG domain-containing protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.604
CF8_3782
Hypothetical protein.
       0.501
CF8_2980
Mannose-1-phosphate guanylyltransferase (GDP).
    
 0.487
CF8_3776
Cyclase/dehydrase.
       0.478
CF8_2677
Peptidoglycan glycosyltransferase.
  
   
 0.469
CF8_0016
Peptidoglycan glycosyltransferase.
  
   
 0.467
CF8_1551
DNA polymerase III, delta subunit.
 
  
 0.458
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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