Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CF8_3867Hypothetical protein. (156 aa)    
Predicted Functional Partners:
CF8_1404
Ferredoxin.
 
 
  0.632
CF8_1928
acyl-CoA dehydrogenase domain-containing; Overlaps another CDS with the same product name.
  
    0.617
CF8_0615
Ferredoxin.
 
 
  0.615
CF8_3572
Oxidoreductase FAD-binding subunit.
 
 
  0.608
CF8_1405
Fatty acid desaturase.
  
     0.586
CF8_0616
Fatty acid desaturase; Overlaps another CDS with the same product name.
  
     0.551
CF8_3571
Fatty acid desaturase.
  
     0.514
CF8_0617
Fatty acid desaturase; Overlaps another CDS with the same product name.
  
     0.510
CF8_1403
Regulatory protein, TetR.
  
     0.501
CF8_1360
Phosphoglycerate mutase.
  
     0.494
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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