Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_3871ABC transporter-like protein. (258 aa)    
Predicted Functional Partners:
CF8_3869
Polar amino acid ABC transporter, inner membrane.
 
 0.999
CF8_3868
Polar amino acid ABC transporter, inner membrane.
 
 0.998
CF8_1006
Polar amino acid ABC transporter, inner membrane.
 0.979
CF8_2573
Polar amino acid ABC transporter, inner membrane; Belongs to the binding-protein-dependent transport system permease family.
 
 0.978
CF8_3870
Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.972
CF8_2570
ABC transporter-like protein.
 
   
 
0.930
CF8_3250
Extracellular solute-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.930
CF8_1007
Extracellular solute-binding protein.
 
 0.928
CF8_2574
Extracellular solute-binding protein.
 
 0.906
CF8_2123
ABC transporter-like protein.
 
  
 
0.861
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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