Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
CF8_3886Peptidase M14 carboxypeptidase A. (706 aa)    
Predicted Functional Partners:
CF8_1546
Hypothetical protein.
  
     0.704
CF8_0499
Hypothetical protein.
  
     0.565
CF8_2876
Hypothetical protein.
  
     0.543
CF8_0848
Hypothetical protein.
  
     0.535
secD-2
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
       0.528
CF8_2259
Hemerythrin HHE cation binding domain-containing.
  
     0.513
CF8_3526
Peptidase M14.
  
     0.460
CF8_3259
Extracellular ribonuclease.
  
  
  0.451
CF8_0060
Helix-turn-helix, type 11 domain-containing.
  
     0.445
CF8_3755
Peptidase M36, fungalysin.
  
 
  0.409
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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