STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_40143-hydroxyisobutyrate dehydrogenase. (79 aa)    
Predicted Functional Partners:
CF8_4019
MmgE/PrpD.
 
 
  0.827
CF8_4016
4-carboxymuconolactone decarboxylase domain protein.
  
 
 0.820
CF8_3994
MmgE/PrpD family protein.
 
 
  0.801
CF8_0467
Pyruvate flavodoxin/ferredoxin oxidoreductase.
    
  0.782
CF8_2315
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.740
CF8_3649
Short chain enoyl-CoA hydratase.
  
 
 0.740
CF8_3996
CoA-binding domain-containing protein.
 
  
  0.691
CF8_2774
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
  
 
 0.689
CF8_3999
Citrate synthase.
 
 
  0.674
CF8_2937
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.669
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.