Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CF8_4041Sedoheptulose 7-phosphate isomerase. (246 aa)    
Predicted Functional Partners:
CF8_4036
TPR repeat-containing protein.
 
     0.925
CF8_4035
Hydrogenase maturation protease.
 
   
 0.922
CF8_4038
NHL repeat-containing protein.
 
    0.922
CF8_4037
Nitrogen-fixing NifU domain-containing protein.
 
     0.920
CF8_4042
Phosphoheptose isomerase.
 
     0.920
CF8_4046
Hypothetical protein.
 
     0.891
CF8_4034
Hydrogenase-2, large subunit.
 
   
 0.876
CF8_4040
Hydrogenase assembly chaperone hypC/hupF.
 
     0.859
CF8_4033
Hydrogenase (NiFe) small subunit HydA.
 
     0.837
CF8_4039
NiFe hydrogenase maturation protein.
     
 0.828
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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