Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_4059Hypothetical protein; Overlaps another CDS with the same product name. (418 aa)    
Predicted Functional Partners:
CF8_4060
Hypothetical protein; Overlaps another CDS with the same product name.
       0.773
CF8_0565
Short-chain dehydrogenase/reductase SDR.
     
  0.636
CF8_0615
Ferredoxin.
     
  0.502
CF8_1356
phenylacetate-CoA oxygenase/reductase, PaaK.
     
  0.502
CF8_1404
Ferredoxin.
     
  0.502
CF8_2168
Ferredoxin.
     
  0.502
CF8_3201
phenylacetate-CoA oxygenase/reductase, PaaK.
     
  0.502
CF8_3572
Oxidoreductase FAD-binding subunit.
     
  0.502
CF8_4057
Hypothetical protein.
       0.432
CF8_3663
2,4-dienoyl-CoA reductase.
    
  0.426
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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