Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_4071Hypothetical protein; Overlaps another CDS with the same product name. (328 aa)    
Predicted Functional Partners:
CF8_4073
ABC transporter-like protein.
 
  0.904
CF8_4070
Hypothetical protein; Overlaps another CDS with the same product name.
       0.777
CF8_4072
Hypothetical protein; Overlaps another CDS with the same product name.
      
0.777
CF8_4109
ABC transporter-like protein.
  
  0.602
CF8_1023
ABC transporter-like protein.
  
  0.522
CF8_2942
ABC transporter-like protein.
  
  0.500
CF8_4074
Hypothetical protein.
       0.473
CF8_2580
Methyltransferase.
  
     0.469
CF8_2143
Daunorubicin resistance ABC transporter ATPase.
  
  0.460
CF8_4069
Major facilitator transporter.
       0.453
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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