Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_4099Hypothetical protein. (130 aa)    
Predicted Functional Partners:
CF8_2991
Cell envelope-related transcriptional.
   
    0.756
CF8_1984
AsnC family transcriptional regulator.
   
    0.641
CF8_1004
Chromosome replication initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
    0.622
CF8_2552
Regulatory protein, MarR.
   
    0.599
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
   
    0.589
CF8_3829
Silent information regulator protein Sir2.
   
    0.589
CF8_3808
Helix-turn-helix, HxlR type.
   
    0.577
CF8_2141
Transcriptional regulator.
   
    0.527
CF8_2702
Hypothetical protein.
   
    0.527
CF8_2604
Transcriptional regulator.
   
    0.509
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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