Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CF8_4130Hypothetical protein; Overlaps another CDS with the same product name. (302 aa)    
Predicted Functional Partners:
phnC-2
ABC transporter-like protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.979
CF8_4129
Hypothetical protein; Overlaps another CDS with the same product name.
 
 
 0.972
phnC
ABC transporter-like protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 
 0.947
CF8_4128
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
     0.890
CF8_0956
Phosphonate ABC transporter.
 
 
 0.884
CF8_3383
Phosphate binding protein.
  
 
 0.844
CF8_4133
Hypothetical protein.
 
  
 0.840
CF8_0180
Binding-protein-dependent transport system; Overlaps another CDS with the same product name.
   
 
 0.829
CF8_0323
Substrate-binding region of ABC-type glycine.
    
  0.829
CF8_0477
Extracellular solute-binding protein.
   
 
 0.824
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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