STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CF8_4179Methyltransferase type 11. (310 aa)    
Predicted Functional Partners:
CF8_4178
VWA containing CoxE family protein.
 
     0.949
CF8_4176
Iron-containing alcohol dehydrogenase.
 
     0.885
CF8_4177
ATPase.
 
     0.818
CF8_4181
Putative two-component.
  
     0.771
CF8_0369
FAD dependent oxidoreductase; Belongs to the GcvT family.
     
 0.698
CF8_1660
Hypothetical protein.
 
     0.611
CF8_4182
Iron-containing alcohol dehydrogenase.
 
     0.597
CF8_1482
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
 
     0.589
CF8_1663
Glycosyl transferase family 2.
 
     0.581
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.565
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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