Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CF8_4192Hypothetical protein. (143 aa)    
Predicted Functional Partners:
CF8_0410
Histone deacetylase superfamily protein.
  
 0.950
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.950
CF8_3829
Silent information regulator protein Sir2.
  
 
 0.911
cobB
Silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
 
 0.903
CF8_0066
SNF2-related protein.
    
 0.900
CF8_1358
Helicase domain-containing protein.
    
 0.900
CF8_2625
Putative helicase.
    
 0.900
CF8_4123
Hypothetical protein.
    
 0.898
CF8_0295
Hypothetical protein.
  
 
 0.888
CF8_1135
Tetratricopeptide TPR_2.
    
 0.872
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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