Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CF8_4231Benzoate transporter. (385 aa)    
Predicted Functional Partners:
CF8_0565
Short-chain dehydrogenase/reductase SDR.
 
   
 0.646
CF8_0564
Major facilitator transporter.
 
   
 0.565
CF8_4232
Carbon monoxide dehydrogenase subunit G.
 
     0.539
CF8_0566
Aromatic-ring-hydroxylating dioxygenase, beta.
 
   
 0.518
CF8_0567
Rieske (2Fe-2S) domain-containing protein.
 
   
 0.442
CF8_0563
Regulatory protein, LuxR.
 
     0.435
Your Current Organism:
Nocardioides sp. CF8
NCBI taxonomy Id: 110319
Other names: N. sp. CF8
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