STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000402835_00346Unannotated protein. (516 aa)    
Predicted Functional Partners:
GCA_000402835_00599
Unannotated protein.
  
 
 0.901
GCA_000402835_00670
Unannotated protein.
  
 
  0.854
GCA_000402835_00213
Unannotated protein.
  
  
 
0.850
GCA_000402835_00530
Unannotated protein.
   
 
  0.822
GCA_000402835_00255
Unannotated protein.
   
 
  0.813
GCA_000402835_00835
Unannotated protein.
    
  0.735
GCA_000402835_00218
Unannotated protein.
  
  
  0.680
GCA_000402835_00055
Unannotated protein.
   
 
 0.674
GCA_000402835_00427
Unannotated protein.
   
 
 0.659
GCA_000402835_00594
Unannotated protein.
   
 
 0.659
Your Current Organism:
Synergistetes bacterium JGI 0000079D21
NCBI taxonomy Id: 1104568
Other names: S. bacterium JGI 0000079-D21, Synergistetes bacterium JGI 0000079-D21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.