STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000402835_00456Unannotated protein. (278 aa)    
Predicted Functional Partners:
GCA_000402835_00417
Unannotated protein.
 
  
 0.970
GCA_000402835_00418
Unannotated protein.
 
  
 0.834
GCA_000402835_00144
Unannotated protein.
 
  
 0.739
GCA_000402835_00480
Unannotated protein.
  
 
  0.725
GCA_000402835_00052
Unannotated protein.
    
  0.704
GCA_000402835_00141
Unannotated protein.
    
 0.703
GCA_000402835_00145
Unannotated protein.
    
 0.640
GCA_000402835_00034
Unannotated protein.
    
  0.617
GCA_000402835_00035
Unannotated protein.
    
  0.617
GCA_000402835_00360
Unannotated protein.
    
 0.571
Your Current Organism:
Synergistetes bacterium JGI 0000079D21
NCBI taxonomy Id: 1104568
Other names: S. bacterium JGI 0000079-D21, Synergistetes bacterium JGI 0000079-D21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.