STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
larCTIGR00299 family protein; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family. (514 aa)    
Predicted Functional Partners:
EJF40963.1
TIGR00268 family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 0.990
EJF40735.1
Phosphoribosylaminoimidazole carboxylase.
 
  
 0.957
EJF41860.1
PF09861 family protein.
 
  
 0.814
EJF40958.1
Hypothetical protein; Identified by glimmer; putative.
       0.741
EJF38238.1
4Fe-4S binding domain protein.
  
    0.456
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
       0.441
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
       0.441
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.429
Your Current Organism:
Clostridium sp. MSTE9
NCBI taxonomy Id: 1105031
Other names: C. sp. MSTE9
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