STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuAAGlycine betaine ABC transporter, ATP-binding protein OpuAA. (397 aa)    
Predicted Functional Partners:
opuAB
Glycine betaine transport system permease protein opuAB.
 0.999
EJF38434.1
ABC transporter, quaternary amine uptake transporter family, substrate-binding protein.
 
 0.999
EJF38438.1
ABC transporter, quaternary amine uptake transporter family, substrate-binding protein.
 
 0.998
EJF40105.1
PF10947 family protein.
  
 0.980
EJF38297.1
ABC transporter transmembrane region.
 
     
0.744
EJF40476.1
Trk system potassium uptake protein TrkA, C-terminal domain protein.
 
   
 0.503
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.428
Your Current Organism:
Clostridium sp. MSTE9
NCBI taxonomy Id: 1105031
Other names: C. sp. MSTE9
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