Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KMV24200.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)    
Predicted Functional Partners:
KMV24199.1
DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.976
KMV22875.1
beta-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.950
KMV19103.1
Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.876
KMV19104.1
Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.875
KMV24161.1
Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.872
KMV22876.1
Lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  0.869
KMV23217.1
acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.865
KMV20126.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.846
KMV24255.1
Nonspecific lipid-transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.828
KMV24302.1
Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.827
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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