Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KMV24248.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
KMV24238.1
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.659
KMV23515.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.623
KMV24155.1
Cysteine hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
KMV24200.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.598
KMV24246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.598
KMV23505.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
KMV14134.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
KMV24247.1
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.542
KMV24139.1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
KMV20775.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.516
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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