Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMV22636.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
KMV22634.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.898
KMV22635.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.892
KMV23246.1
Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.717
KMV21022.1
Lipoprotein LprD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.700
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.682
KMV22446.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
KMV21269.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
KMV23914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
KMV23131.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
KMV20836.1
Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.560
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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