Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KMV21971.1Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
KMV21918.1
Dihydroorotate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.900
KMV18057.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.826
pyrD
Diguanylate cyclase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.818
KMV22832.1
Lipoprotein lpqE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
KMV22719.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.769
KMV21435.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
KMV22445.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
KMV24554.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KMV23828.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KMV24516.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.749
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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