STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMV21111.1Lipoprotein LpqB; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)    
Predicted Functional Partners:
KMV21078.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.882
KMV21077.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.881
KMV21080.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
KMV21670.1
Monoacyl phosphatidylinositol tetramannoside-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.787
KMV24475.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
KMV21353.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
KMV21993.1
Cutinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.765
KMV22371.1
Lipoprotein LprC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.761
KMV24476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KMV24347.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.753
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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