Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
KMV16827.1Secretion protein EccE; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)    
Predicted Functional Partners:
eccD-3
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.997
KMV23568.1
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.976
eccB
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.972
KMV16824.1
Secretion protein EspG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.971
mycP-2
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.967
eccD
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.847
eccB-3
Secretion protein EccB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.837
KMV20742.1
Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.745
KMV21408.1
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.732
KMV23787.1
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.721
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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