Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KMV15015.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (368 aa)    
Predicted Functional Partners:
KMV14311.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.779
KMV14455.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
 
     0.774
KMV13501.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.764
KMV13550.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
KMV13968.1
Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.760
KMV14247.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.739
KMV23312.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
KMV15016.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
KMV13567.1
PPE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.530
KMV14279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family.
 
     0.521
Your Current Organism:
Mycobacterium heckeshornense
NCBI taxonomy Id: 110505
Other names: CCUG 51897, CIP 107347, DSM 44428, JCM 15655, M. heckeshornense, Mycobacterium heckeshornense Roth et al. 2001, strain S369
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