Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCE_00205Proline/betaine transporter; COG0477 Permeases of the major facilitator superfamily. (415 aa)    
Predicted Functional Partners:
queH
Hypothetical protein; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).
       0.788
MCE_00190
Toxin of toxin-antitoxin; COG1487 Predicted nucleic acid-binding protein, contains PIN domain.
       0.558
MCE_00195
Putative antitoxin of toxin-antitoxin (TA) system; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.558
MCE_00175
Sua5/YciO/YrdC/YwlC family translation factor protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.493
glyS
COG0751 Glycyl-tRNA synthetase, beta subunit.
       0.493
glyQ
COG0752 Glycyl-tRNA synthetase, alpha subunit.
       0.493
MCE_00210
Hypothetical protein.
       0.472
MCE_00215
COG1474 Cdc6-related protein, AAA superfamily ATPase.
       0.472
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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