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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_00325PhnP protein; COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I. (254 aa)    
Predicted Functional Partners:
MCE_00320
Glutamine ABC transporter ATP-binding protein; COG1126 ABC-type polar amino acid transport system, ATPase component.
  
    0.814
lipB
Lipoate-protein ligase B; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate.
 
    
 0.756
MCE_00750
Pyrroloquinoline quinone (coenzyme PQQ) biosynthesis protein C.
  
  
 0.595
MCE_00330
PAP2 family phosphoesterase; COG0671 Membrane-associated phospholipid phosphatase.
       0.583
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.524
MCE_00315
Antitoxin of toxin-antitoxin (TA) system StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.439
MCE_00335
COG3077 DNA-damage-inducible protein J.
       0.418
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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