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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_01250VacJ lipoprotein precursor; COG2853 Surface lipoprotein. (260 aa)    
Predicted Functional Partners:
MCE_01245
Hypothetical protein; COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 
 
 0.956
MCE_01380
Hypothetical protein.
 
 
 
 0.857
MCE_07125
ABC transporter substrate binding protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
   
 0.843
MCE_01255
Hypothetical protein; COG0457 FOG: TPR repeat.
       0.799
MCE_01230
ABC transporter permease protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
   
 0.702
MCE_01225
Ribonucleotide ABC transporter ATP-binding protein; COG1127 ABC-type transport system involved in resistance to organic solvents, ATPase component.
 
   
 0.632
MCE_01260
Antitoxin of toxin-antitoxin; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.528
MCE_01265
Putative toxin of toxin-antitoxin (TA) system; COG4115 Uncharacterized protein conserved in bacteria.
       0.528
MCE_02570
Hypothetical protein; COG0457 FOG: TPR repeat.
     
 0.494
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
   
 0.445
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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