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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_03170COG0438 Glycosyltransferase. (390 aa)    
Predicted Functional Partners:
MCE_00060
Hypothetical protein.
 
 
 
 0.835
MCE_01445
COG3660 Predicted nucleoside-diphosphate-sugar epimerase.
 
     0.773
MCE_04030
DNA helicase II; COG0210 Superfamily I DNA and RNA helicases.
   
 
 0.738
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.734
MCE_03295
COG3307 Lipid A core - O-antigen ligase and related enzymes.
 
  
 0.689
MCE_07645
COG1004 Predicted UDP-glucose 6-dehydrogenase.
  
  
 0.674
MCE_03130
Hypothetical protein.
  
  
 0.663
MCE_03165
Putative hydrolase/acyltransferase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
 0.607
MCE_00340
Hypothetical protein; COG0795 Predicted permeases.
 
     0.599
MCE_00345
COG2927 DNA polymerase III, chi subunit.
  
     0.577
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.