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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_03295COG3307 Lipid A core - O-antigen ligase and related enzymes. (411 aa)    
Predicted Functional Partners:
MCE_03300
COG4765 Uncharacterized protein conserved in bacteria.
 
     0.871
MCE_03120
COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.798
MCE_07650
Hypothetical protein.
 
     0.760
MCE_01445
COG3660 Predicted nucleoside-diphosphate-sugar epimerase.
 
     0.759
MCE_03150
COG0463 Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.748
MCE_02455
COG2825 Outer membrane protein.
 
     0.714
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
 
     0.703
MCE_02930
tonB/tolA protein.
 
     0.701
MCE_06680
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
     0.697
MCE_03170
COG0438 Glycosyltransferase.
 
  
 0.689
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.