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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_04025COG0463 Glycosyltransferases involved in cell wall biogenesis. (281 aa)    
Predicted Functional Partners:
MCE_04020
Hypothetical protein.
       0.774
MCE_03130
Hypothetical protein.
  
  
 0.655
MCE_04030
DNA helicase II; COG0210 Superfamily I DNA and RNA helicases.
     
 0.647
MCE_00535
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.632
MCE_00530
O-antigen export system ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
 
 
 0.514
pheT
phenylalanyl-tRNA synthetase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.509
MCE_06315
Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.
 
 
 
 0.490
MCE_04015
Succinate semialdehyde dehydrogenase; COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.445
MCE_03150
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
  
0.415
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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