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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_04255COG1396 Predicted transcriptional regulators. (130 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.747
MCE_01355
Putative cytoplasmic protein; COG3820 Uncharacterized protein conserved in bacteria.
  
     0.688
MCE_07555
COG0795 Predicted permeases.
 
     0.669
MCE_00340
Hypothetical protein; COG0795 Predicted permeases.
 
     0.621
MCE_03845
Osmolarity sensor protein EnvZ; COG0642 Signal transduction histidine kinase.
 
   
 0.585
holA
COG1466 DNA polymerase III, delta subunit.
  
     0.573
MCE_07140
COG3814 Uncharacterized protein conserved in bacteria.
  
     0.510
MCE_03660
Hypothetical protein; COG2887 RecB family exonuclease.
 
     0.491
MCE_04625
COG0642 Signal transduction histidine kinase.
     
 0.470
MCE_05825
COG0642 Signal transduction histidine kinase.
     
 0.470
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.