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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_05665Conjugative transfer protein TraC; COG1171 Threonine dehydratase. (134 aa)    
Predicted Functional Partners:
MCE_01180
COG3702 Type IV secretory pathway, VirB3 components.
  
 
 0.950
MCE_02745
Hypothetical protein; COG3736 Type IV secretory pathway, component VirB8.
  
 
 0.947
MCE_05670
Conjugative transfer protein TraW.
 
   
 0.938
MCE_01150
Hypothetical protein; COG3704 Type IV secretory pathway, VirB6 components.
 
  
 0.846
MCE_02735
Channel protein; COG3736 Type IV secretory pathway, component VirB8.
  
 
 0.803
MCE_05900
Conjugative transfer protein TraN.
 
   
 0.792
MCE_05890
F pilus assembly protein TraH.
 
     0.789
MCE_02730
VirB9; COG3504 Type IV secretory pathway, VirB9 components.
  
  
 0.782
MCE_02755
virB10 protein; COG2948 Type IV secretory pathway, VirB10 components.
  
  
 0.782
MCE_05885
Conjugative transfer protein TraG.
 
   
 0.781
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.