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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_05940Conjugal transfer protein TraA. (314 aa)    
Predicted Functional Partners:
MCE_07165
COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains).
  
 
 0.857
MCE_06015
Conjugal transfer protein TraA; COG0358 DNA primase (bacterial type).
 
     0.712
MCE_05875
Conjugative transfer protein TraD; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.710
MCE_05885
Conjugative transfer protein TraG.
 
     0.692
MCE_05890
F pilus assembly protein TraH.
 
     0.659
MCE_05995
Putative conjugative transfer protein TraD; COG3505 Type IV secretory pathway, VirD4 components.
 
     0.656
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
  0.642
MCE_05610
Acetyltransferase GNAT family protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
    0.642
MCE_05895
F pilus assembly protein TraF.
 
   
 0.624
MCE_05695
Conjugative transfer protein TrbC; COG0526 Thiol-disulfide isomerase and thioredoxins.
 
     0.616
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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