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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_06250Nitrogen regulation protein NtrY; COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. (599 aa)    
Predicted Functional Partners:
MCE_04910
Nitrogen assimilation regulatory protein NtrX; COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
 0.986
MCE_05825
COG0642 Signal transduction histidine kinase.
 
 
 
 0.737
MCE_04625
COG0642 Signal transduction histidine kinase.
 
 
 
 0.727
MCE_01365
Transcriptional activator protein CzcR; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 
 0.615
MCE_03850
Transcriptional regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
 
 0.589
MCE_03845
Osmolarity sensor protein EnvZ; COG0642 Signal transduction histidine kinase.
 
 
 
 0.489
MCE_00960
Putative transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
   
 
 0.478
MCE_02220
COG0642 Signal transduction histidine kinase.
 
 
 
 0.427
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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