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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_06680Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase. (295 aa)    
Predicted Functional Partners:
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.935
MCE_02235
WD-40 repeat-containing protein; COG1520 FOG: WD40-like repeat.
  
 
 0.926
MCE_02205
Ankyrin; COG0666 FOG: Ankyrin repeat.
 
 
 
 0.845
MCE_04615
Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins.
 
 
   0.774
MCE_07650
Hypothetical protein.
  
     0.772
MCE_05935
HemK; COG2890 Methylase of polypeptide chain release factors.
 
     0.770
MCE_01155
Channel protein; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.768
MCE_01160
VirB6; COG3704 Type IV secretory pathway, VirB6 components.
  
     0.766
MCE_07010
Outer membrane protein OmpB; COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain.
 
     0.764
MCE_01310
Cell surface antigen Sca2.
 
     0.763
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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