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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (706 aa)    
Predicted Functional Partners:
MCE_06680
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
 
  
 0.935
MCE_04215
COG1934 Uncharacterized protein conserved in bacteria.
  
 
 0.893
MCE_00340
Hypothetical protein; COG0795 Predicted permeases.
 
  
 0.784
MCE_07555
COG0795 Predicted permeases.
 
  
 0.739
MCE_03660
Hypothetical protein; COG2887 RecB family exonuclease.
  
     0.715
MCE_07375
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.711
MCE_00270
Outer membrane lipoprotein-sorting protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.695
MCE_02235
WD-40 repeat-containing protein; COG1520 FOG: WD40-like repeat.
  
   
 0.682
MCE_07010
Outer membrane protein OmpB; COG4625 Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain.
  
     0.681
MCE_07650
Hypothetical protein.
  
     0.677
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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