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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCE_06880COG3306 Glycosyltransferase involved in LPS biosynthesis. (265 aa)    
Predicted Functional Partners:
MCE_02205
Ankyrin; COG0666 FOG: Ankyrin repeat.
  
     0.706
MCE_03150
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.690
MCE_01310
Cell surface antigen Sca2.
  
     0.559
MCE_06860
LicD family protein; COG3475 LPS biosynthesis protein.
 
     0.523
MCE_06855
COG3475 LPS biosynthesis protein.
 
     0.480
MCE_05935
HemK; COG2890 Methylase of polypeptide chain release factors.
  
     0.435
MCE_06070
Actin polymerization protein RickA.
  
     0.416
Your Current Organism:
Rickettsia amblyommatis
NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.