MCE_06935 protein (Rickettsia amblyommatis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCE_06935

COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (183 aa)

Predicted Functional Partners:

rnc

0.694

clpX

0.667

MCE_06315

0.633

queC

0.493

MCE_06245

0.446

MCE_03415

0.443

Your Current Organism:

Rickettsia amblyommatis

NCBI taxonomy Id: 1105111
Other names: Candidatus Rickettsia amblyommii str. GAT-30V, R. amblyommatis str. GAT-30V, Rickettsia amblyommatis str. GAT-30V

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCE_03415	MCE_06315	MCE_03415	MCE_06315	COG0281 Malic enzyme.	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	0.895
MCE_03415	MCE_06935	MCE_03415	MCE_06935	COG0281 Malic enzyme.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.443
MCE_06245	MCE_06315	MCE_06245	MCE_06315	COG3173 Predicted aminoglycoside phosphotransferase.	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	0.663
MCE_06245	MCE_06935	MCE_06245	MCE_06935	COG3173 Predicted aminoglycoside phosphotransferase.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.446
MCE_06315	MCE_03415	MCE_06315	MCE_03415	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	COG0281 Malic enzyme.	0.895
MCE_06315	MCE_06245	MCE_06315	MCE_06245	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	COG3173 Predicted aminoglycoside phosphotransferase.	0.663
MCE_06315	MCE_06935	MCE_06315	MCE_06935	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.633
MCE_06315	clpX	MCE_06315	MCE_06930	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.431
MCE_06935	MCE_03415	MCE_06935	MCE_03415	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	COG0281 Malic enzyme.	0.443
MCE_06935	MCE_06245	MCE_06935	MCE_06245	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	COG3173 Predicted aminoglycoside phosphotransferase.	0.446
MCE_06935	MCE_06315	MCE_06935	MCE_06315	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	0.633
MCE_06935	clpX	MCE_06935	MCE_06930	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.667
MCE_06935	queC	MCE_06935	MCE_06940	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	Trans-regulatory protein exsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	0.493
MCE_06935	rnc	MCE_06935	MCE_01415	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.694
clpX	MCE_06315	MCE_06930	MCE_06315	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	Acylglycerophosphoethanolamine acyltransferase; COG0477 Permeases of the major facilitator superfamily.	0.431
clpX	MCE_06935	MCE_06930	MCE_06935	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.667
clpX	queC	MCE_06930	MCE_06940	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	Trans-regulatory protein exsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	0.420
queC	MCE_06935	MCE_06940	MCE_06935	Trans-regulatory protein exsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.493
queC	clpX	MCE_06940	MCE_06930	Trans-regulatory protein exsB; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.	ATP-dependent protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.	0.420
rnc	MCE_06935	MCE_01415	MCE_06935	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins.	0.694